Information for motif4


Reverse Opposite:

p-value:1e-11
log p-value:-2.533e+01
Information Content per bp:1.707
Number of Target Sequences with motif637.0
Percentage of Target Sequences with motif14.22%
Number of Background Sequences with motif2742.8
Percentage of Background Sequences with motif10.96%
Average Position of motif in Targets485.4 +/- 472.1bp
Average Position of motif in Background481.1 +/- 465.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GCACAHCAGC--
CGAAGCACACAAAATA

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCACAHCAGC--
AGCGGCACACACGCAA

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCACAHCAGC--
ATGTCACAACAACAC

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCACAHCAGC---
GAGCACAGCAGGACA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCACAHCAGC
RSCACTYRAG-

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GCACAHCAGC-
NNTTTGCACACGGCCC

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCACAHCAGC---
-CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCACAHCAGC---
CCACACAGCAGGAGA

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------GCACAHCAGC
NNGTATGTGCACATNNN-

MA0596.1_SREBF2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCACAHCAGC
ATCACCCCAT-