Information for motif5


Reverse Opposite:

p-value:1e-10
log p-value:-2.532e+01
Information Content per bp:1.942
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets478.2 +/- 418.4bp
Average Position of motif in Background682.6 +/- 330.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGCCAAGGGGAG
AGGTCAAGGTCA-

MA0163.1_PLAG1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAGGGGAG
GGGGCCCAAGGGGG

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGCCAAGGGGAG
AGCCAATCGG--

MA0141.2_Esrrb/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGCCAAGGGGAG
AGCTCAAGGTCA-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGCCAAGGGGAG
-BTCAAGGTCA-

MA0592.1_ESRRA/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCCAAGGGGAG-
--CCAAGGTCACA

MA0505.1_Nr5a2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAGGGGAG-
AAGTTCAAGGTCAGC

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCCAAGGGGAG
TGCCAA------

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGCCAAGGGGAG
-NTCAAGGTCA-

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGCCAAGGGGAG
--CAAAGGTCAG