Information for motif6


Reverse Opposite:

p-value:1e-10
log p-value:-2.453e+01
Information Content per bp:1.886
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets241.1 +/- 212.7bp
Average Position of motif in Background216.8 +/- 137.4bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0025.1_NFIL3/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GGTACATAACGA
ANGTTACATAA---

PB0015.1_Foxa2_1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GGTACATAACGA-
AAAAAGTAAACAAAGAC

PB0096.1_Zfp187_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGTACATAACGA
TTATTAGTACATAN---

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGTACATAACGA
AGGTCTCTAACC-

PB0017.1_Foxj3_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGTACATAACGA-
AAAAAGTAAACAAACAC

PH0152.1_Pou6f1_2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGTACATAACGA------
-AAACATAATGAGGTTGC

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGTACATAACGA-
CGAAGCACACAAAATA

PB0031.1_Hoxa3_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGTACATAACGA
TGGAGGTAATTAAC--

PH0053.1_Hoxa6/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGTACATAACGA
NTNAGGTAATTACCTT

MA0030.1_FOXF2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGTACATAACGA
CAAACGTAAACAAT--