Information for motif1


Reverse Opposite:

p-value:1e-19
log p-value:-4.551e+01
Information Content per bp:1.598
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets332.1 +/- 341.5bp
Average Position of motif in Background388.9 +/- 288.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:1
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CAATCTGTAAGT-
WNAGTCADAVTGAAACTN

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAATCTGTAAGT
GAAAGTGAAAGT

ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAATCTGTAAGT
GAAACTGAAACT

MA0498.1_Meis1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAATCTGTAAGT-----
--AGCTGTCACTCACCT

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAATCTGTAAGT
GAAASYGAAASY

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAATCTGTAAGT
RCCATMTGTT---

MA0124.1_NKX3-1/Jaspar

Match Rank:7
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CAATCTGTAAGT--
-------TAAGTAT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAATCTGTAAGT
GCCATCTGTT---

MA0153.1_HNF1B/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAATCTGTAAGT
TTAATATTTAAC-

MA0461.1_Atoh1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAATCTGTAAGT
GCCATCTG-----