Information for motif17


Reverse Opposite:

p-value:1e-8
log p-value:-1.901e+01
Information Content per bp:1.573
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets391.9 +/- 272.8bp
Average Position of motif in Background685.6 +/- 600.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--SCCAMCCAGKGC
GGACCACCCACG--

MA0592.1_ESRRA/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:SCCAMCCAGKGC---
----CCAAGGTCACA

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----SCCAMCCAGKGC
ANNTNCCCACCCANNAC

MA0071.1_RORA_1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:SCCAMCCAGKGC-
---ATCAAGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:SCCAMCCAGKGC--
----TCAAGGTCAN

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:SCCAMCCAGKGC-------
--CGAACAGTGCTCACTAT

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:SCCAMCCAGKGC------
-TATTCAAGGTCATGCGA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:SCCAMCCAGKGC-
---NTCAAGGTCA

MA0502.1_NFYB/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------SCCAMCCAGKGC
AAATGGACCAATCAG---

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:SCCAMCCAGKGC-
---BTCAAGGTCA