Information for motif19


Reverse Opposite:

p-value:1e-8
log p-value:-1.851e+01
Information Content per bp:1.813
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets479.1 +/- 316.8bp
Average Position of motif in Background1000.3 +/- 735.7bp
Strand Bias (log2 ratio + to - strand density)4.6
Multiplicity (# of sites on avg that occur together)2.60
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TGTGGAYTKTCA
NNTGTGGATTSS--

MA0479.1_FOXH1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGTGGAYTKTCA
TGTGGATTNNN-

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGTGGAYTKTCA--
NNATTGGACTTTNGNN

MA0130.1_ZNF354C/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGTGGAYTKTCA
-GTGGAT-----

MA0511.1_RUNX2/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------TGTGGAYTKTCA
GGGGTTTGTGGTTTG---

MA0002.2_RUNX1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGTGGAYTKTCA
GTCTGTGGTTT----

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGTGGAYTKTCA
NNHTGTGGTTWN---

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGTGGAYTKTCA
NNTGTGGTTT----

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGAYTKTCA
CTGTGGTTTN---

PB0169.1_Sox15_2/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGTGGAYTKTCA-----
--TNGAATTTCATTNAN