Information for motif27


Reverse Opposite:

p-value:1e-6
log p-value:-1.465e+01
Information Content per bp:1.865
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif186.3
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets328.1 +/- 262.3bp
Average Position of motif in Background406.4 +/- 422.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0042.1_FOXI1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TATTTAKTTATT
GGATGTTTGTTT---

PH0038.1_Hlx/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TATTTAKTTATT-
TGTAATTAATTATGG

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TATTTAKTTATT
TGTTTATTT---

PH0095.1_Lhx5/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TATTTAKTTATT---
ANNATTTAATTAATTNN

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TATTTAKTTATT
TGTTTACTTT--

PH0172.1_Tlx2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TATTTAKTTATT-
AANTTATTAATTAATTA

PH0142.1_Pou1f1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TATTTAKTTATT-
GANTTAATTAATTANNN

PH0093.1_Lhx3/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TATTTAKTTATT---
NNTATTTAATTAATTNN

PH0108.1_Msx3/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TATTTAKTTATT
NNNTTAATTGGTTTTN

PB0015.1_Foxa2_1/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TATTTAKTTATT
NNNTTTGTTTACTTTTN