Information for motif28


Reverse Opposite:

p-value:1e-6
log p-value:-1.395e+01
Information Content per bp:1.894
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif32.0
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets611.0 +/- 597.6bp
Average Position of motif in Background526.2 +/- 360.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGGGTCGCAT---
NGTAGGTTGGCATNNN

PB0154.1_Osr1_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGGGTCGCAT--
NNNTTAGGTAGCNTNT

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGGGTCGCAT---
GTATTGGGTGGGTAATT

PB0059.1_Six6_1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGGGTCGCAT----
AATAGGGTATCATATAT

PB0143.1_Klf7_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGGGTCGCAT----
NNNTNGGGCGTATNNTN

PB0155.1_Osr2_2/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGGGTCGCAT--
NNTGTAGGTAGCANNT

MA0130.1_ZNF354C/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGGGTCGCAT
GTGGAT-----

PH0161.1_Six1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGGGTCGCAT----
GATGGGGTATCATTTTT

PH0166.1_Six6_2/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGGGTCGCAT----
AATAGGGTATCAATATT

PB0114.1_Egr1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGGGTCGCAT---
TGCGGAGTGGGACTGG