Information for motif34


Reverse Opposite:

p-value:1e-3
log p-value:-8.972e+00
Information Content per bp:1.905
Number of Target Sequences with motif635.0
Percentage of Target Sequences with motif14.17%
Number of Background Sequences with motif2173.9
Percentage of Background Sequences with motif12.34%
Average Position of motif in Targets450.1 +/- 477.5bp
Average Position of motif in Background478.0 +/- 464.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.85
Offset:-5
Orientation:forward strand
Alignment:-----CAAAAAAA-
TACTGGAAAAAAAA

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAA-----
GTTAAAAAAAAAAATTA

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAA-----
GTTCAAAAAAAAAATTC

PB0186.1_Tcf3_2/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CAAAAAAA--
AGCCGAAAAAAAAAT

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------CAAAAAAA-
CAATTGCAAAAATAT

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAA----
CTACCAATAAAATTCT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAAAAAAA
GTCATAAAAN

MA0465.1_CDX2/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAA
AAGCCATAAAA-

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAA----
AACCCAATAAAATTCG

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CAAAAAAA
NCYAATAAAA-