Information for motif39


Reverse Opposite:

p-value:1e-2
log p-value:-5.336e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets354.6 +/- 192.8bp
Average Position of motif in Background670.0 +/- 639.9bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0101.1_Zic1_1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCCCTCCTGGAG--
CCCCCCCGGGGGNN

MA0057.1_MZF1_5-13/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCCCTCCTGGAG
TTCCCCCTAC-----

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-9
Orientation:forward strand
Alignment:---------CCCCTCCTGGAG
CNNBRGCGCCCCCTGSTGGC-

PB0103.1_Zic3_1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTCCTGGAG--
NCCCCCCCGGGGGGN

MA0103.2_ZEB1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCCCTCCTGGAG
CCTCACCTG---

MA0598.1_EHF/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCCCTCCTGGAG
-CCTTCCTG---

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTCCTGGAG
CCCCCTGCTGTG-

MA0139.1_CTCF/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CCCCTCCTGGAG-
TAGCGCCCCCTGGTGGCCA

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTCCTGGAG--
ACCCCCCCGGGGGGN

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTCCTGGAG
CCCCCCCC-----