Information for motif4


Reverse Opposite:

p-value:1e-11
log p-value:-2.603e+01
Information Content per bp:1.683
Number of Target Sequences with motif719.0
Percentage of Target Sequences with motif16.05%
Number of Background Sequences with motif2211.8
Percentage of Background Sequences with motif12.55%
Average Position of motif in Targets461.8 +/- 431.0bp
Average Position of motif in Background471.5 +/- 453.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGACAGGGTCT
CCAGACAG-----

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAGACAGGGTCT
CCAGACRSVB---

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GAGACAGGGTCT-
NNAGGGACAAGGGCNC

GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----GAGACAGGGTCT---
NNNNNBAGATAWYATCTVHN

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------GAGACAGGGTCT
NNNACCGAGAGTNNN---

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GAGACAGGGTCT-
GGAGAAAGGTGCGA

PB0138.1_Irf4_2/Jaspar

Match Rank:7
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------GAGACAGGGTCT
GNNACCGAGAATNNN---

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------GAGACAGGGTCT
AGGTGNCAGACAG-----

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GAGACAGGGTCT
BCAGACWA-----

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.49
Offset:-6
Orientation:forward strand
Alignment:------GAGACAGGGTCT
CAAATCCAGACATCACA-