Information for motif9


Reverse Opposite:

p-value:1e-9
log p-value:-2.209e+01
Information Content per bp:1.767
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif86.8
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets358.3 +/- 375.2bp
Average Position of motif in Background577.4 +/- 502.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0081.1_Tcf1_1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TTAGCTAACK----
NNNTTAGTTAACTNANN

PH0167.1_Tcf1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTAGCTAACK----
NTTTTAGTTAACNNAGN

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTAGCTAACK---
ANNNCTAGTTAACNGNN

MA0025.1_NFIL3/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTAGCTAACK-
TTATGTAACAT

PH0128.1_Otp/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TTAGCTAACK--
CGTAATTAATTAATTGG

PH0011.1_Alx1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGCTAACK--
NNNAATTAATTAANGNG

PH0173.1_Uncx/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TTAGCTAACK--
CATAATTAATTAACGCG

MA0117.1_Mafb/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTAGCTAACK-
---GCTGACGC

PH0051.1_Hoxa4/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TTAGCTAACK--
GATTATTAATTAACTTG

PH0153.1_Prop1/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGCTAACK--
GNNTNTTAATTAATNCN