Information for motif1


Reverse Opposite:

p-value:1e-43
log p-value:-1.002e+02
Information Content per bp:1.769
Number of Target Sequences with motif478.0
Percentage of Target Sequences with motif10.69%
Number of Background Sequences with motif425.0
Percentage of Background Sequences with motif5.41%
Average Position of motif in Targets413.8 +/- 427.3bp
Average Position of motif in Background520.2 +/- 459.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGRGGGC-------
GCCASCAGGGGGCGCYVNNG

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---CCACYAGRGGGC----
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCACYAGRGGGC-----
TGGCCACCAGGTGGCACTNT

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCACYAGRGGGC
CACAGCAGGGGG-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCACYAGRGGGC
--AACAGATGGC

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CCACYAGRGGGC
----CAGATGGC

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCACYAGRGGGC------
-NNNAAGGGGGCGGGNNN

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGRGGGC-
CCCCCCCGGGGGNN

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGRGGGC-
NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGRGGGC-
ACCCCCCCGGGGGGN