Information for motif2


Reverse Opposite:

p-value:1e-8
log p-value:-2.001e+01
Information Content per bp:1.860
Number of Target Sequences with motif132.0
Percentage of Target Sequences with motif2.95%
Number of Background Sequences with motif134.0
Percentage of Background Sequences with motif1.70%
Average Position of motif in Targets387.5 +/- 383.4bp
Average Position of motif in Background610.5 +/- 462.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGTACAGTGGT---
NNNANTGCAGTGCNNTT

MA0515.1_Sox6/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGTACAGTGGT
-AAAACAATGG-

MA0077.1_SOX9/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGTACAGTGGT
--GAACAATGG-

MA0032.1_FOXC1/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GAGTACAGTGGT
GGTAAGTA-------

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGTACAGTGGT
--GAACAATGGN

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGTACAGTGGT----
ATGTACAGTAGCAAAG

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGTACAGTGGT------
-CGAACAGTGCTCACTAT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAGTACAGTGGT
--CTYRAGTGSY

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GAGTACAGTGGT-
---TTGAGTGSTT

MA0143.3_Sox2/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GAGTACAGTGGT
---AACAAAGG-