Information for motif20


Reverse Opposite:

p-value:1e-1
log p-value:-2.883e+00
Information Content per bp:1.840
Number of Target Sequences with motif749.0
Percentage of Target Sequences with motif16.75%
Number of Background Sequences with motif1247.6
Percentage of Background Sequences with motif15.87%
Average Position of motif in Targets443.3 +/- 425.7bp
Average Position of motif in Background539.6 +/- 463.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTTGCCCAGGCT---
-ATGCCCGGGCATGT

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCCAGGCT-
NGTTGCCATGGCAA

MA0509.1_Rfx1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTTGCCCAGGCT--
GTTGCCATGGNAAC

MA0600.1_RFX2/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGCCCAGGCT--
NNNCNGTTGCCATGGNAAC

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCCAGGCT--
CGGTTGCCATGGCAAC

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:GTTGCCCAGGCT-
--------NGCTN

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCCAGGCT-
GGTTGCCATGGCAA

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTTGCCCAGGCT---
GTTGCCATGGCAACM

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTTGCCCAGGCT
HTTTCCCASG--

MA0164.1_Nr2e3/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GTTGCCCAGGCT-
------CAAGCTT