Information for motif27


Reverse Opposite:

p-value:1e0
log p-value:-4.661e-01
Information Content per bp:1.910
Number of Target Sequences with motif90.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif163.7
Percentage of Background Sequences with motif2.08%
Average Position of motif in Targets354.8 +/- 375.2bp
Average Position of motif in Background536.0 +/- 479.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GATCATGC-
ACATCCTGNT

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GATCATGC
-GTCATN-

PH0016.1_Cux1_1/Jaspar

Match Rank:3
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GATCATGC---
TNAGNTGATCAACCGGT

PH0017.1_Cux1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GATCATGC---
TAGTGATCATCATTA

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GATCATGC-------
NNTCCTGCTGTGNNN

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GATCATGC
NTATYGATCH---

MA0067.1_Pax2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GATCATGC
AGTCACGC

NRF1/Promoter/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GATCATGC----
GCGCATGCGCAC

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GATCATGC------
AGATGCTRCTRCCHT

MA0506.1_NRF1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GATCATGC---
GCGCCTGCGCA