Information for motif4


Reverse Opposite:

p-value:1e-6
log p-value:-1.410e+01
Information Content per bp:1.770
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets453.8 +/- 363.8bp
Average Position of motif in Background413.9 +/- 363.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AATAACTAAATA
--AAAGTAAACA

PH0038.1_Hlx/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AATAACTAAATA--
CCATAATTAATTACA

PB0015.1_Foxa2_1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AATAACTAAATA-----
AAAAAGTAAACAAAGAC

PH0095.1_Lhx5/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AATAACTAAATA--
CGAATTAATTAAATACT

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AATAACTAAATA
--AAAGTAAACA

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AATAACTAAATA
---AAATAAACA

PH0142.1_Pou1f1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AATAACTAAATA----
GATTAATTAATTAAGTC

PH0143.1_Pou2f1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AATAACTAAATA
ATATATTAATTAAGTA

MA0042.1_FOXI1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AATAACTAAATA---
---AAACAAACANNC

PH0093.1_Lhx3/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AATAACTAAATA--
GAAATTAATTAAATAAT