Information for motif6


Reverse Opposite:

p-value:1e-4
log p-value:-9.518e+00
Information Content per bp:1.975
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets598.3 +/- 344.9bp
Average Position of motif in Background214.5 +/- 145.0bp
Strand Bias (log2 ratio + to - strand density)4.5
Multiplicity (# of sites on avg that occur together)2.56
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0024.1_Gcm1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGATGCTGGTGT--
NNNNATGCGGGTNNNN

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGATGCTGGTGT---
AGATGCTRCTRCCHT

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGATGCTGGTGT-
---NNCAGGTGNN

MA0522.1_Tcf3/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGATGCTGGTGT-
--NTGCAGCTGTG

MA0103.2_ZEB1/Jaspar

Match Rank:5
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TGATGCTGGTGT--
-----CAGGTGAGG

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGATGCTGGTGT----
TNNTGCTACTGTNNNN

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGATGCTGGTGT
---NGCTN----

PB0105.1_Arid3a_2/Jaspar

Match Rank:8
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCTGGTGT
NNATNTGATANNNNN--

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TGATGCTGGTGT-----
--GTNTTGTTGTGANNT

MA0464.1_Bhlhe40/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:TGATGCTGGTGT-
--NTGCACGTGAG