Information for motif7


Reverse Opposite:

p-value:1e-3
log p-value:-8.486e+00
Information Content per bp:1.728
Number of Target Sequences with motif140.0
Percentage of Target Sequences with motif3.13%
Number of Background Sequences with motif181.0
Percentage of Background Sequences with motif2.30%
Average Position of motif in Targets373.1 +/- 406.1bp
Average Position of motif in Background573.5 +/- 465.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGCAAGACTSWD
--CCAGACAG--

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGCAAGACTSWD
AGGTGHCAGACA---

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGCAAGACTSWD
AGGTGNCAGACAG--

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGCAAGACTSWD
--BCAGACWA--

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCAAGACTSWD
ATGCCAGACN---

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGCAAGACTSWD
--CCAGACRSVB

MA0598.1_EHF/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGCAAGACTSWD
CAGGAAGG-----

PB0037.1_Isgf3g_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGCAAGACTSWD
CAAAATCGAAACTAA-

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGCAAGACTSWD--
CAAATCCAGACATCACA

PB0035.1_Irf5_1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGCAAGACTSWD
ATAAACCGAAACCAA-