Information for motif8


Reverse Opposite:

p-value:1e-3
log p-value:-7.840e+00
Information Content per bp:1.914
Number of Target Sequences with motif447.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif672.5
Percentage of Background Sequences with motif8.56%
Average Position of motif in Targets453.9 +/- 438.3bp
Average Position of motif in Background542.8 +/- 445.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGCACTCCAG
RSCACTYRAG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGCACTCCAG
AASCACTCAA-

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGCACTCCAG----
AATCGCACTGCATTCCG

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGCACTCCAG
AGCCACTCAAG

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGCACTCCAG-
-GCATTCCAGN

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGCACTCCAG
NCCACTTAN-

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCACTCCAG-
-RCATTCCWGG

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGCACTCCAG
AGATGCAATCCC-

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCACTCCAG
AAGCACTTAA-

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------TGCACTCCAG-
CAGATGTGCACATACGT