Information for motif9


Reverse Opposite:

p-value:1e-2
log p-value:-6.777e+00
Information Content per bp:1.723
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif76.1
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets393.5 +/- 439.8bp
Average Position of motif in Background589.8 +/- 467.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTCCNGGGTTCA-----
CTCCAGGGGTCAATTGA

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTCCNGGGTTCA-----
NTNNNGGGGTCANGNNN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTCCNGGGTTCA----
CGCGCCGGGTCACGTA

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCCNGGGTTCA-----
GGCGAGGGGTCAAGGGC

MA0154.2_EBF1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTCCNGGGTTCA
GTCCCCAGGGA---

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTCCNGGGTTCA----
AGAGCGGGGTCAAGTA

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTCCNGGGTTCA
ACCACTCTCGGTCAC-

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTCCNGGGTTCA--
----TGGTTTCAGT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CTCCNGGGTTCA
------AGGTCA

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTCCNGGGTTCA
NGTCCCNNGGGA---