Information for motif12


Reverse Opposite:

p-value:1e-5
log p-value:-1.156e+01
Information Content per bp:1.698
Number of Target Sequences with motif453.0
Percentage of Target Sequences with motif8.37%
Number of Background Sequences with motif1610.8
Percentage of Background Sequences with motif6.85%
Average Position of motif in Targets419.3 +/- 402.2bp
Average Position of motif in Background448.8 +/- 413.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAGGCTGGTCA
-TWGTCTGV---

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCAGGCTGGTCA
CGTGGGTGGTCC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCAGGCTGGTCA
CCAGACAG----

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAGGCTGGTCA----
CGCGCCGGGTCACGTA

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCAGGCTGGTCA
-AAGGCAAGTGT

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCAGGCTGGTCA
CAAATCCAGACATCACA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CCAGGCTGGTCA
------AGGTCA

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCAGGCTGGTCA
---NGCTN----

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCAGGCTGGTCA
CCAGACRSVB--

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGCTGGTCA----
NNANTGGTGGTCTTNNN