Information for motif13


Reverse Opposite:

p-value:1e-4
log p-value:-9.242e+00
Information Content per bp:1.967
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets456.8 +/- 547.1bp
Average Position of motif in Background587.8 +/- 282.7bp
Strand Bias (log2 ratio + to - strand density)-3.7
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGAGGGCCGCCT
TNNGGGCAG---

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGAGGGCCGCCT---
TTGGGGGCGCCCCTAG

PB0201.1_Zfp281_2/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGAGGGCCGCCT
NNNATTGGGGGTNTCCT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGAGGGCCGCCT
CTTGAGTGGCT---

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGAGGGCCGCCT---
NNGGCCACGCCTTTN

MA0516.1_SP2/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGAGGGCCGCCT------
---GCCCCGCCCCCTCCC

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TGAGGGCCGCCT
TTGAGTGSTT---

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGAGGGCCGCCT------
CNNBRGCGCCCCCTGSTGGC

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TGAGGGCCGCCT-----
TACGCCCCGCCACTCTG

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:TGAGGGCCGCCT
----GGCGCGCT