Information for motif14


Reverse Opposite:

p-value:1e-4
log p-value:-9.238e+00
Information Content per bp:1.893
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets290.0 +/- 152.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0123.1_Foxl1_2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGTTAYGCT--
NNTTTTGTTTTGATNT

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGTTGTTAYGCT
NNNTGTTGTTGTTNG

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGTTAYGCT--
GTNTTGTTGTGANNT

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGTTAYGCT-
NNCGTTGCTATGGNN

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGTTAYGCT-
NCCGTTGCTANGNGN

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGTTAYGCT
CTGTTGCTAGGS-

MA0133.1_BRCA1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGTTAYGCT
GTGTTGN------

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGTTGTTAYGCT
GCTGTGGTTT----

PB0121.1_Foxj3_2/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGTTAYGCT---
NNCTTTGTTTTGNTNNN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGTTAYGCT
CTGTGGTTTN---