Information for motif18


Reverse Opposite:

p-value:1e-3
log p-value:-8.101e+00
Information Content per bp:1.670
Number of Target Sequences with motif732.0
Percentage of Target Sequences with motif13.53%
Number of Background Sequences with motif2816.9
Percentage of Background Sequences with motif11.98%
Average Position of motif in Targets376.5 +/- 375.3bp
Average Position of motif in Background413.6 +/- 413.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.49
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTGSAGTGC----
NNNANTGCAGTGCNNTT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AGGCTGSAGTGC-
---CTYRAGTGSY

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AGGCTGSAGTGC--
----TTGAGTGSTT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGGCTGSAGTGC--
---CTTGAGTGGCT

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGGCTGSAGTGC-
----TTAAGTGGA

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGGCTGSAGTGC--
----TTAAGTGCTT

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGGCTGSAGTGC----
AANTTCAAGTGGCTTN

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGGCTGSAGTGC----
AATTTCAAGTGGCTTN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGGCTGSAGTGC
TWGTCTGV-----

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGGCTGSAGTGC-
---ATGGGGTGAT