Information for motif19


Reverse Opposite:

p-value:1e-3
log p-value:-8.070e+00
Information Content per bp:1.811
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets404.8 +/- 281.1bp
Average Position of motif in Background558.2 +/- 465.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.71
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GTGCCCTGCTAG
GGGTGTGCCCAAAAGG

MA0597.1_THAP1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTGCCCTGCTAG
CTGCCCGCA---

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTGCCCTGCTAG-
-CCCCCTGCTGTG

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTGCCCTGCTAG----
-TCNCCTGCTGNGNNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GTGCCCTGCTAG
CTGTTCCTGG----

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGCCCTGCTAG----
-TNTCCTGCTGTGNNG

MA0160.1_NR4A2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTGCCCTGCTAG
GTGACCTT----

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------GTGCCCTGCTAG-
CNNBRGCGCCCCCTGSTGGC

MA0139.1_CTCF/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GTGCCCTGCTAG---
TAGCGCCCCCTGGTGGCCA

MA0524.1_TFAP2C/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GTGCCCTGCTAG----
-TGCCCTGGGGCNANN