Information for motif2


Reverse Opposite:

p-value:1e-13
log p-value:-3.103e+01
Information Content per bp:1.891
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets445.3 +/- 474.3bp
Average Position of motif in Background470.9 +/- 210.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.54
Offset:6
Orientation:forward strand
Alignment:ACGGGAGAGCTA
------CAGCC-

MA0508.1_PRDM1/Jaspar

Match Rank:2
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---ACGGGAGAGCTA
AGAAAGTGAAAGTGA

MA0499.1_Myod1/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:ACGGGAGAGCTA--
-NGNGACAGCTGCN

MA0521.1_Tcf12/Jaspar

Match Rank:4
Score:0.51
Offset:4
Orientation:forward strand
Alignment:ACGGGAGAGCTA---
----AACAGCTGCAG

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:ACGGGAGAGCTA
----AACAGCTG

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-ACGGGAGAGCTA---
GTATTGACAGCTNNTT

MA0500.1_Myog/Jaspar

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:ACGGGAGAGCTA---
----GACAGCTGCAG

MA0471.1_E2F6/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--ACGGGAGAGCTA
GGGCGGGAAGG---

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--ACGGGAGAGCTA
GAAAGTGAAAGT--

MA0470.1_E2F4/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--ACGGGAGAGCTA
GGGCGGGAAGG---