Information for motif20


Reverse Opposite:

p-value:1e-3
log p-value:-7.210e+00
Information Content per bp:1.980
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets359.3 +/- 214.1bp
Average Position of motif in Background255.5 +/- 202.6bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)3.60
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGAGGTGCTGTC--
GCGGAGGTGTCGCCTC

PB0041.1_Mafb_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAGGTGCTGTC-----
AAATTTGCTGACTTAGA

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGAGGTGCTGTC-----
-AAGCACCTGTCAATAT

MA0498.1_Meis1/Jaspar

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGAGGTGCTGTC--------
-----AGCTGTCACTCACCT

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:AGAGGTGCTGTC
------GCTGTG

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAGGTGCTGTC------
-NNNCAGCTGTCAATATN

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGAGGTGCTGTC-
ATCCACAGGTGCGAAAA

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGAGGTGCTGTC---
-----TGCTGACTCA

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGAGGTGCTGTC-----
-AACTAGCTGTCAATAC

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGAGGTGCTGTC-----
-AATTACCTGTCAATAC