Information for motif23


Reverse Opposite:

p-value:1e-2
log p-value:-5.943e+00
Information Content per bp:1.530
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif242.5
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets317.9 +/- 375.5bp
Average Position of motif in Background436.1 +/- 459.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGTAGAGACA-
GGTTAGAGACCT

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGTAGAGACA
GGTAAGTA------

MA0481.1_FOXP1/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGTAGAGACA-
CAAAAGTAAACAAAG

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGTAGAGACA-----
CAAATCCAGACATCACA

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGTAGAGACA----
CTACTTGGATACGGAAT

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTAGAGACA
TTAAGTGGA----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGTAGAGACA-
---CCAGACAG

MA0593.1_FOXP2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGTAGAGACA
AAGTAAACAAA

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGTAGAGACA
AAAGTAAACA--

PB0015.1_Foxa2_1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGTAGAGACA---
AAAAAGTAAACAAAGAC