Information for motif24


Reverse Opposite:

p-value:1e-2
log p-value:-5.811e+00
Information Content per bp:1.967
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets203.7 +/- 169.0bp
Average Position of motif in Background660.8 +/- 535.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCACAGTGAGAA
NWAACCACADNN----

MA0002.2_RUNX1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGTGAGAA
AAACCACAGAN----

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGTGAGAA
AAACCACAGC-----

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCACAGTGAGAA
NAAACCACAG------

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCACAGTGAGAA
-CACAGN-----

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGTGAGAA--
NNTNNACAATGGGANNN

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCACAGTGAGAA--
----CSTGGGAAAD

MA0511.1_RUNX2/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CCACAGTGAGAA
CAAACCACAAACCCC-

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCACAGTGAGAA----
-TTGACCGAGAATTCC

MA0078.1_Sox17/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCACAGTGAGAA
-GACAATGNN--