Information for motif25


Reverse Opposite:

p-value:1e-2
log p-value:-5.528e+00
Information Content per bp:1.929
Number of Target Sequences with motif146.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif505.3
Percentage of Background Sequences with motif2.15%
Average Position of motif in Targets330.0 +/- 275.7bp
Average Position of motif in Background465.1 +/- 440.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0090.1_Zbtb12_1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTGGTCTCGAAC-----
NNGATCTAGAACCTNNN

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTGGTCTCGAAC-
-AGGTCTCTAACC

MA0505.1_Nr5a2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGGTCTCGAAC--
GCTGACCTTGAACTN

PB0036.1_Irf6_1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTGGTCTCGAAC--
NNNTTGGTTTCGNTNNN

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGGTCTCGAAC-
-TGACCTTGACCT

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGGTCTCGAAC
-TGACCTTGAN-

PB0034.1_Irf4_1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGGTCTCGAAC--
TNTGGTTTCGATACN

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGGTCTCGAAC--
--TGTCTGDCACCT

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGGTCTCGAAC
-TGACCTTGAV-

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CTGGTCTCGAAC
NNANTGGTGGTCTTNNN-