Information for motif27


Reverse Opposite:

p-value:1e-2
log p-value:-5.246e+00
Information Content per bp:1.864
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif397.8
Percentage of Background Sequences with motif1.69%
Average Position of motif in Targets344.1 +/- 307.7bp
Average Position of motif in Background439.6 +/- 394.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0037.2_GATA3/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAGAAAAGAACA
-AGATAAGA---

MA0029.1_Mecom/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAGAAAAGAACA--
AAGATAAGATAACA

MA0035.3_Gata1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AAGAAAAGAACA
ANAGATAAGAA--

MA0036.2_GATA2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AAGAAAAGAACA-
NCAGATAAGAANNN

MA0041.1_Foxd3/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AAGAAAAGAACA---
---AAACAAACATTC

PB0093.1_Zfp105_1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAGAAAAGAACA----
-AACAAACAACAAGAG

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AAGAAAAGAACA-----
--AAAAATAACAAACGG

PB0021.1_Gata3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AAGAAAAGAACA----
TTTTTAGAGATAAGAAATAAAG

MA0482.1_Gata4/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAGAAAAGAACA
NNGAGATAAGA---

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGAAAAGAACA---
CAAACAACAACACCT