Information for motif29


Reverse Opposite:

p-value:1e-1
log p-value:-4.000e+00
Information Content per bp:1.588
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif48.3
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets340.5 +/- 417.0bp
Average Position of motif in Background231.4 +/- 289.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGCCATGATCA---
TAATGATGATCACTA

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGCCATGATCA
-GGCCATTAAC-

MA0592.1_ESRRA/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGCCATGATCA--
---CCAAGGTCACA

PH0016.1_Cux1_1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAGCCATGATCA------
-TNAGNTGATCAACCGGT

MA0095.2_YY1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCATGATCA
GCNGCCATCTTG-

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGCCATGATCA-----
TATTCAAGGTCATGCGA

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGCCATGATCA
CAGCC-------

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GAGCCATGATCA
----CATGAC--

MA0141.2_Esrrb/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAGCCATGATCA
AGCTCAAGGTCA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GAGCCATGATCA
--BTCAAGGTCA