Information for motif3


Reverse Opposite:

p-value:1e-10
log p-value:-2.489e+01
Information Content per bp:1.833
Number of Target Sequences with motif332.0
Percentage of Target Sequences with motif6.14%
Number of Background Sequences with motif987.8
Percentage of Background Sequences with motif4.20%
Average Position of motif in Targets429.6 +/- 445.7bp
Average Position of motif in Background463.1 +/- 415.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GGGCTCAAGC--
CTCCAGGGGTCAATTGA

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GGGCTCAAGC--
NTNNNGGGGTCANGNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGGCTCAAGC--
GGCGAGGGGTCAAGGGC

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGGCTCAAGC-
AGAGCGGGGTCAAGTA

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGGCTCAAGC-
CGCGCCGGGTCACGTA

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGGCTCAAGC-
AGGTCTCTAACC

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGGCTCAAGC
-NGCTN----

MA0505.1_Nr5a2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGCTCAAGC-----
AAGTTCAAGGTCAGC

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGGCTCAAGC-----
GAAGATCAATCACTAA

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GGGCTCAAGC
NNNNTTGGGCACNNCN