Information for motif30


Reverse Opposite:

p-value:1e-1
log p-value:-3.048e+00
Information Content per bp:1.962
Number of Target Sequences with motif533.0
Percentage of Target Sequences with motif9.85%
Number of Background Sequences with motif2158.4
Percentage of Background Sequences with motif9.18%
Average Position of motif in Targets405.6 +/- 373.2bp
Average Position of motif in Background466.1 +/- 427.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0132.1_Pdx1/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:AAAATTAG
--AATTAG

MA0075.1_Prrx2/Jaspar

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:AAAATTAG
--AATTA-

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AAAATTAG-
-TAATTAGN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AAAATTAG-
DCYAAAAATAGM

MA0497.1_MEF2C/Jaspar

Match Rank:5
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----AAAATTAG--
ATGCTAAAAATAGAA

MA0052.2_MEF2A/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----AAAATTAG---
AGCTAAAAATAGCAT

PH0021.1_Dlx2/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AAAATTAG-----
GGAATAATTACCTCAG

PB0002.1_Arid5a_1/Jaspar

Match Rank:8
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------AAAATTAG
NNTNNCAATATTAG

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:9
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AAAATTAG
CCAAAAATAG

MA0125.1_Nobox/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAAATTAG
ACCAATTA-