Information for motif4


Reverse Opposite:

p-value:1e-10
log p-value:-2.485e+01
Information Content per bp:1.718
Number of Target Sequences with motif714.0
Percentage of Target Sequences with motif13.20%
Number of Background Sequences with motif2430.1
Percentage of Background Sequences with motif10.34%
Average Position of motif in Targets404.7 +/- 397.1bp
Average Position of motif in Background459.5 +/- 435.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TGTAATCCCAGC
--TAATCCCN--

PB0185.1_Tcf1_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTAATCCCAGC--
NNTAATCCNGNCNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGTAATCCCAGC
GCTAATCC----

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTAATCCCAGC--
NTTGTTAATCCCTCTNN

PH0124.1_Obox5_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGTAATCCCAGC-
NANANTTAATCCCNNNN

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGTAATCCCAGC-
NNNAATTAATCCCCNCN

PH0125.1_Obox5_2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGTAATCCCAGC-
GATAATTAATCCCTCTT

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGTAATCCCAGC-
GNNNATTAATCCCTNCN

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TGTAATCCCAGC
AGATGCAATCCC---

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGTAATCCCAGC
GNNAGCTAATCCCCCN