Information for motif6


Reverse Opposite:

p-value:1e-8
log p-value:-1.909e+01
Information Content per bp:1.850
Number of Target Sequences with motif830.0
Percentage of Target Sequences with motif15.34%
Number of Background Sequences with motif2978.2
Percentage of Background Sequences with motif12.67%
Average Position of motif in Targets394.6 +/- 398.6bp
Average Position of motif in Background453.4 +/- 431.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCAGYAATCC--
----TAATCCCN

PH0126.1_Obox6/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCAGYAATCC------
-CNATAATCCGNTTNT

PH0025.1_Dmbx1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCAGYAATCC------
NNNATTAATCCGNTTNA

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCAGYAATCC-----
GNNNATTAATCCCTNCN

MA0158.1_HOXA5/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCAGYAATCC
-CACTAATT-

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCAGYAATCC-----
GANNATTAATCCCTNNN

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAGYAATCC-----
AATCGTTAATCCCTTTA

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCAGYAATCC------
--NNTAATCCNGNCNN

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCAGYAATCC-----
NNNAATTAATCCCCNCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCAGYAATCC
--GCTAATCC