Information for motif9


Reverse Opposite:

p-value:1e-6
log p-value:-1.515e+01
Information Content per bp:1.630
Number of Target Sequences with motif412.0
Percentage of Target Sequences with motif7.61%
Number of Background Sequences with motif1394.5
Percentage of Background Sequences with motif5.93%
Average Position of motif in Targets383.4 +/- 340.2bp
Average Position of motif in Background448.2 +/- 441.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGACCNKGTCT----
GAGCCCTTGTCCCTAA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GAGACCNKGTCT--
----VBSYGTCTGG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GAGACCNKGTCT--
------CTGTCTGG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GAGACCNKGTCT--
------TWGTCTGV

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GAGACCNKGTCT
GGTTAGAGACCT-----

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GAGACCNKGTCT
ACTGAAACCA-----

PH0163.1_Six3/Jaspar

Match Rank:7
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GAGACCNKGTCT
ANANGTGATACCCTATN-

GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGACCNKGTCT------
NDBAGATRWTATCTVNNNNN

MA0146.2_Zfx/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GAGACCNKGTCT--
CAGGCCNNGGCCNN

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GAGACCNKGTCT-------
--NNTNNTGTCTGGNNTNG