Information for motif17


Reverse Opposite:

p-value:1e0
log p-value:-4.406e-01
Information Content per bp:1.628
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif13.4
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets455.6 +/- 481.0bp
Average Position of motif in Background521.4 +/- 261.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:ASTCCAGCCTGG
---BCAGACWA-

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ASTCCAGCCTGG
----CAGCC---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ASTCCAGCCTGG
---CCAGACAG-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ASTCCAGCCTGG
NNACTTGCCTT-

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ASTCCAGCCTGG
GGACCACCCACG

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ASTCCAGCCTGG---
CAAATCCAGACATCACA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:ASTCCAGCCTGG-
---CCAGACRSVB

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ASTCCAGCCTGG
-TTCCCGCCWG-

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-ASTCCAGCCTGG---
GATAACATCCTAGTAG

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:ASTCCAGCCTGG----
--ACATGCCCGGGCAT