Information for motif2


Reverse Opposite:

p-value:1e-4
log p-value:-1.054e+01
Information Content per bp:1.879
Number of Target Sequences with motif126.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif128.8
Percentage of Background Sequences with motif1.60%
Average Position of motif in Targets336.3 +/- 412.9bp
Average Position of motif in Background561.7 +/- 460.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCAGTGTT---
NNNANTGCAGTGCNNTT

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAGTGCAGTGTT---
CCTTGCAATTTTTNN

MA0484.1_HNF4G/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGTGCAGTGTT--
AGAGTCCAAAGTCCA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCAGTGTT
TTGAGTGSTT----

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCAGTGTT
TTAAGTGGA-----

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCAGTGTT--
CANAGNNCAAAGTCCA

MA0017.1_NR2F1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGTGCAGTGTT--
AGGTTCAAAGGTCA

MA0512.1_Rxra/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCAGTGTT
CAAAGGTCAGA---

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAGTGCAGTGTT--
----GCAGTGATTT

MA0114.2_HNF4A/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGTGCAGTGTT---
NAGNNCAAAGTCCAN