Information for motif3


Reverse Opposite:

p-value:1e-3
log p-value:-7.265e+00
Information Content per bp:1.665
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif12.2
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets310.2 +/- 310.4bp
Average Position of motif in Background596.3 +/- 443.8bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0125.1_Obox5_2/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----GGATTACWTG--
NANAGGGATTAATTATN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GGATTACWTG
NGGGATTA----

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGATTACWTG--
TAGAGGGATTAAATTTC

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGATTACWTG--
AGAGGGGATTAATTTAT

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGATTACWTG--
TGTAGGGATTAATTGTC

PH0126.1_Obox6/Jaspar

Match Rank:6
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GGATTACWTG
AAAAACGGATTATTG-

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGATTACWTG--
TGAAGGGATTAATCATC

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GGATTACWTG
TTGCCCGGATTAGG--

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GGATTACWTG-
TGAACCGGATTAATGAA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGATTACWTG
GGATTAGC--