Information for motif4


Reverse Opposite:

p-value:1e-2
log p-value:-5.948e+00
Information Content per bp:1.723
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets272.6 +/- 176.0bp
Average Position of motif in Background321.4 +/- 138.2bp
Strand Bias (log2 ratio + to - strand density)4.0
Multiplicity (# of sites on avg that occur together)2.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0111.1_Spz1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGTTACGCTGGT
GCTGTTACCCT---

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTACGCTGGT
NNCTTTGTTTTGNTNNN

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTACGCTGGT
NCNTTTGTTATTTNN--

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGTTACGCTGGT
CTGTTGCTAGGS-

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TGTTACGCTGGT
GTNTTGTTGTGANNT-

MA0087.1_Sox5/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGTTACGCTGGT
ATTGTTA-------

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGTTACGCTGGT
ATTGTT--------

MA0498.1_Meis1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TGTTACGCTGGT
AGCTGTCACTCACCT

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGTTACGCTGGT
NNNTGTTGTTGTTNG

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTACGCTGGT
AATNTTGATACCCTATN