Information for motif5


Reverse Opposite:

p-value:1e-2
log p-value:-5.283e+00
Information Content per bp:1.944
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif37.6
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets374.0 +/- 299.3bp
Average Position of motif in Background521.3 +/- 493.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0064.1_Sox14_1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TTATTATTATTA--
NNTAATTATAATTNNN

PB0069.1_Sox21_1/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTATTATTATTA--
NNTAATTATAATNANN

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TTATTATTATTA--
NANTATTATAATTNNN

PB0129.1_Glis2_2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTATTATTATTA
TCTTTANTAATANN-

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTATTATTATTA--
TAATTGTTCTAAAC

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTATTATTATTA
NCNTTTGTTATTTNN-

PB0172.1_Sox1_2/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTATTATTATTA---
CTATAATTGTTAGCG

PH0017.1_Cux1_2/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTATTATTATTA
TAGTGATCATCATTA

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTATTATTATTA-
NNNTGTTGTTGTTNG

PH0046.1_Hoxa10/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTATTATTATTA----
TNAATTTTATTACCTN