| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-65 | -1.502e+02 | 0.0000 | 676.0 | 12.51% | 497.8 | 6.18% | motif file (matrix) | |
| 2 | | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-42 | -9.808e+01 | 0.0000 | 736.0 | 13.62% | 649.2 | 8.06% | motif file (matrix) |