Information for motif1


Reverse Opposite:

p-value:1e-10
log p-value:-2.318e+01
Information Content per bp:1.618
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif68.18%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif15.63%
Average Position of motif in Targets319.7 +/- 256.2bp
Average Position of motif in Background420.2 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0464.1_Bhlhe40/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TGCATGTG--
NTGCACGTGAG

MA0058.2_MAX/Jaspar

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TGCATGTG---
-CCATGTGCTT

MA0147.2_Myc/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TGCATGTG---
-CCATGTGCTT

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------TGCATGTG---
NTTNTATGAATGTGNNC

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGCATGTG--
NNCAGGTGNN

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGCATGTG--
KCCACGTGAC

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGCATGTG---
-KCACGTGMCN

MA0507.1_POU2F2/Jaspar

Match Rank:8
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------TGCATGTG
TTCATTTGCATAT-

c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGCATGTG---
-CCACGTGGNN

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGCATGTG--
--CACGTGNC