Information for motif19


Reverse Opposite:

p-value:1e-2
log p-value:-6.788e+00
Information Content per bp:1.575
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif63.64%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif36.62%
Average Position of motif in Targets266.1 +/- 160.6bp
Average Position of motif in Background468.3 +/- 112.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TATGTCCATG--
--TGACCTTGAV

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TATGTCCATG--
--TGACCTTGAN

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TATGTCCATG
AAGATATCCTT-

MA0507.1_POU2F2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TATGTCCATG-
TTCATTTGCATAT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TATGTCCATG-
-CTGTTCCTGG

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TATGTCCATG----
NNNNATGACCTTGANTN

MA0592.1_ESRRA/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TATGTCCATG-
NGTGACCTTGG

PH0082.1_Irx2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TATGTCCATG-------
TAAATACATGTAAAATT

MA0141.2_Esrrb/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TATGTCCATG----
--TGACCTTGANNN

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TATGTCCATG
ATTTTCCATT