Information for motif20


Reverse Opposite:

p-value:1e-2
log p-value:-6.788e+00
Information Content per bp:1.622
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif63.64%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif35.78%
Average Position of motif in Targets317.9 +/- 261.6bp
Average Position of motif in Background642.6 +/- 238.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTTTGGGA---
-CSTGGGAAAD

MA0056.1_MZF1_1-4/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTTTGGGA
--TGGGGA

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTTTGGGA
--TTGGCA

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTTTGGGA-------
TATTATGGGATGGATAA

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTTTGGGA---
RGSMTBCTGGGAAAT

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTTTGGGA
NGTCCCNNGGGA

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTTGGGA-
-CTTGGCAA

MA0154.2_EBF1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGGGA-
TCCCTGGGGAN

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTTTGGGA
CTTTGT--

PB0161.1_Rxra_2/Jaspar

Match Rank:10
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------CTTTGGGA
NNNNCAACCTTCGNGA