Information for motif22


Reverse Opposite:

p-value:1e-2
log p-value:-5.443e+00
Information Content per bp:1.355
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif59.09%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif32.73%
Average Position of motif in Targets319.2 +/- 232.5bp
Average Position of motif in Background741.8 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)2.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0116.1_Zfp423/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CCNNNGDKGB-
GCACCCCTGGGTGCC

PB0101.1_Zic1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCNNNGDKGB-
CACCCCCGGGGGGG

PB0102.1_Zic2_1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCNNNGDKGB-
CCCCCCCGGGGGGGT

PB0103.1_Zic3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCNNNGDKGB-
CCCCCCCGGGGGGGT

MA0154.2_EBF1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCNNNGDKGB
TCCCTGGGGAN

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCNNNGDKGB-
TCCCNNGGGACN

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCNNNGDKGB-
TCCCCTGGGGAC

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCNNNGDKGB---
TACCCTAGTTACCGA

MA0163.1_PLAG1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCNNNGDKGB
GGGGCCCAAGGGGG

MA0143.3_Sox2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCNNNGDKGB
CCTTTGTT--