Information for motif4


Reverse Opposite:

p-value:1e-7
log p-value:-1.769e+01
Information Content per bp:1.779
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif59.09%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif17.99%
Average Position of motif in Targets378.2 +/- 292.2bp
Average Position of motif in Background583.2 +/- 311.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---ATTYATTC-----
NNCATTCATTCATNNN

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ATTYATTC----
ACATTCATGACACG

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----ATTYATTC---
AATCAATTCAATAATT

MA0135.1_Lhx3/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATTYATTC---
AAATTAATTAATC

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ATTYATTC
TAATTGATTA

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATTYATTC-
NTTTTATGAC

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATTYATTC
NTATYGATCH

PH0142.1_Pou1f1/Jaspar

Match Rank:8
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------ATTYATTC---
GANTTAATTAATTANNN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATTYATTC--
TTTTATTRGN

PH0149.1_Pou3f4/Jaspar

Match Rank:10
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------ATTYATTC---
GANTTAATTAATTAANN