Information for motif5


Reverse Opposite:

p-value:1e-7
log p-value:-1.769e+01
Information Content per bp:1.667
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif59.09%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif16.82%
Average Position of motif in Targets285.2 +/- 278.7bp
Average Position of motif in Background784.6 +/- 88.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CATCATAT
ATTGCATCAT--

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CATCATAT
ATTGCATCAK--

MA0488.1_JUN/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CATCATAT-
ATGACATCATCNN

PB0181.1_Spdef_2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CATCATAT---
GATAACATCCTAGTAG

PB0105.1_Arid3a_2/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CATCATAT--
ACCCGTATCAAATTT

PB0176.1_Sox5_2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATCATAT----
TATCATAATTAAGGA

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CATCATAT----
TCACCCATCAATAAACA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:8
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CATCATAT
GYCATCMATCAT--

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CATCATAT
-GTCATN-

MA0492.1_JUND_(var.2)/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CATCATAT--
NATGACATCATCNNN